Friday, 5 August 2016

In silico Study of Bacillus brevis Xylanase

The most important building block of hemicelluloses is xylan. It is broken down into xylose oligomer residues by Xylanase - an enzyme, produced by most organisms, to utilize xylose as primary source of carbon. The Xylanase produced are classified into families, viz 5, 8, 10, 11 and 43 - of Glycoside Hydrolases (GH). Xylanase from family GH 11 are monospecific, they consist solely of Xylanase activity, exclusively active on D-xylose containing substrates.They are inactive on aryl cellobiosides. The fungal Xylanase are produced in higher concentrations, as compared to bacterial Xylanase, but have limited use in pulp bleaching, as they affect the viscosity and strength of the product. In the present study, we have worked upon the Xylanase of Bacillus brevis, which is fulfilling all the required quality needed to be a commercial Xylanase, and thus is used by many industries. The enzyme, when studied after modelling, provided similar structural configuration with high stability. When compared with other bacterial and fungal Xylanase structures, it provided better potential to ‘activity enhancement’ and ‘in silico handling’.
xylanase

Hemicellulose is one of the most important polysaccharide found in the cell wall of the woody plants. It is made up of various building blocks, which are heteropolysaccharides found along with cellulose constituting about 20-30% of the wood dry weight. It is the second most abundant polysaccharide after cellulose. Xylan is built fromhomopolymeric backbone chain of 1, 4-linked β-D-xylopyranose units, including short chains of O-acetyl, α-L-arabinofuranosyl and D-glucuronyl or O-methyl-D-glucuronyl residues. Complete degradation of xylan requires a concerted and synergistic function of several enzymes - including endo-beta-1, 4-D-Xylanase (EC 3.2.1.8). Xylanase break down the xylan into oligoxylose residues, which are utilized by microbes as primary source of carbon.


Different types of Xylanase have been grouped under the category of Glycoside Hydrolases (GH), which are further classified into various families. These families are classified on the basis of similarities in their amino acid sequences and hydrophobic cluster analysis. Xylanase are classified into many families like 5, 8, 10, 11 and 43 of Glycoside Hydrolases. Xylanase are also classified into two groups, based on their molecular weight and pI. One group has low molecular weight <30 kDa and basic pI, while the other group has higher molecular weight >30 kDa and acidic pI. Xylanase from family 10 (GH10) and family 11 (GH11) of Glycoside Hydrolases are the major and beststudied Xylanase.

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